spmScripts¶

Statistical Parametric Mapping (SPM) comes with a nice user interface, but sometimes small Matlab scripts can help answer your research question. A quick search of the web is usually able to find someone else who has encountered the same problem and written a Matlab script. Here are some useful links for SPM scripting.

Wiki introduction to SPM scripting

John Ashburners’ Gems for ( old versions of SPM )

Jimmy’s Toolbox.

Michael Lombardo has some very useful SPM scripts.

Toolboxes¶

I have a separate web pages describing my various SPM toolboxes and more complicated scripting pipelines:

MRIcroS is a simple Matlab program for viewing surface renderings. This can be useful for viewing fMRI activations. The source code is available from the MRIcroS GitHub repository.

Clinical toolbox web page for normalizing CT, T1, T2, FLAIR, DW images from clinical populations.

My preprocessing and statistical scripts provide a analysis pipeline.

My ASL scripts extend SPM8/ASLtbx features for analyzing arterial spin labeling data.

My Matlab scripts for processing DTI data using FSL.

My own scripts¶

I now host my spmScripts on GitHub.